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Section: Dissemination

Teaching

Teaching

  • Jonathan Rault , (192h ETD over 2011-2012) “Mathematical analysis and probabilities”, initial cycle of Polytech'Nice (eq. L1-L2), Université of Nice Sophia Antipolis, France.

  • Mickael Teixeira Alves (25 ETD) “Mathématiques pour la Biologie", L1 Life Sciences, University of Nice - Sophia Antipolis, France.

  • F. Grognard (45.5h ETD) and L. Mailleret (26h ETD), “Equation différentielles ordinaires et systèmes dynamiques”, 1st year Engineering in Modelling and Applied Mathematics (eq. L3), Polytech'Nice, Université of Nice Sophia Antipolis, France.

  • F. Grognard (21h ETD) and L. Mailleret (21h ETD), “Bio-Mathématiques”, 2nd year Engineering in Modelling and Applied Mathematics (eq. M1), Polytech'Nice, Université of Nice Sophia Antipolis, France.

  • O. Bernard (9h ETD), J.-L. Gouzé (9h ETD), F. Grognard (4.5h ETD), P. Hartmann (7.5h ETD), “Mathematical models in Biology”. Master on biological oceanography in Villefranche-sur-Mer (M2), Université Pierre et Marie Curie, France.

  • O. Bernard (4.5 ETD), “Bioenergy from microalgae”, Master International Energy Management : alternatives pour l'énergie du futur, Ecole Nationale Supérieure des Mines de Paris, France.

  • M. Chaves (18h ETD), X.-D. Li (8h ETD), “Modelling biological networks by ordinary differential equations”, 4th year students, Génie Biologie, Ecole Polytechnique University of Nice - Sophia Antipolis, France.

  • M. Chaves (9h ETD), J.-L. Gouzé (9h ETD), “Discrete and continuous approaches to model gene regulatory networks”, Master of Science in Computational Biology (M2), University of Nice - Sophia Antipolis, France.

O. Bernard supervised two projects for engineer school students. The first project involved 10 students of Ecole Nationale Supérieure des Mines de Paris (last year of engineering school, 1 week, "Modelling temperature evolution in microalgal growth process" ) and the second project involved 4 students from the Ecole Centrale de Paris (first year of engineering school, 4 months, developing a simulator to predict algal growth in a culturing device; Solutions to regulate temperature".

M. Chaves and J.-L. Gouzé have prepared (jointly with the other teachers) a book chapter entitled “Modeling and analysis of gene regulatory networks” on the topics taught in the course Computational Biology, to appear in a Springer volume [53] .

Theses

  • PhD in progress : J. Rault, “Modélisation mathématique du plancton, structuré en taille. Conséquence sur la séquestration du carbone dans l'océan”, since september 2008, UNSA. Supervisors: E. Benoît and J.-L. Gouzé.

  • PhD in progress : M. Teixeira-Alves, “Modélisation de réseaux écologiques dans un cadre de protection des cultures: applications à la lutte biologique”, since september 2009, UNSA. Supervisor: F. Grognard and L. Mailleret.

  • PhD in progress : P. Hartmann, "`Développement d'un modèle de photoadaptation phytoplanctonique", since september 2010, UNSA. Supervisor: O. Bernard.

  • PhD in progress : M. Castel “Modélisation des trajectoires évolutives des pathogènes de plantes dans les écosystèmes agricoles", since October 2010, University of Rennes. Supervisors : Frédéric Hamelin and Didier Andrivon (Agrocampus Ouest) and L. Mailleret.

  • PhD in progress : A. Carta, “Analysis and Control of models of biological regulatory systems. Application to growth control in E. coli”, since december 2010, UNSA. Supervisors: J.-L. Gouzé and M. Chaves.

  • PhD in progress : C. Baroukh, “Modelling the coupling of microalgae with anaerobic digestion”, since September 2011, U.Montpellier 2. Supervisors: J.-P. Steyer and O. Bernard.

  • PhD in progress : I. Belgacem “Controle de systèmes de régulation génétique”, since November 2011, UNSA. Supervisor: J.-L. Gouzé.

  • PhD in progress : A. Lebon, “Modélisation couplée plantes-ravageurs-ennemis naturels dans un contexte de lutte biologique". Since October 2011, University of Montpellier. Supervisors : Y. Dumont (CIRAD), F. Grognard and L. Mailleret.

Participation in PhD juries

O. Bernard is in the thesis committee of J. Mailier (Université polytechnique de Mons), P. Collet (University of Montpellier), Sofiane Mazeghrane (University of Montpellier).

J.-L. Gouzé was referee for the thesis of Yassin Refahi (Université Montpellier 2, Informatique) “Multiscale modelling of Arabidopsis thaliana phyllotaxis perturbation”; referee for the thesis of Ihab Haidar, (Université Montpellier 2 (Mathématiques Appliquées)), “Dynamiques microbiennes et modélisation des cycles biogéochimiques terrestres” ; he was in the jury of the thesis of Flora Cordoleani (Université Aix-Marseille (Océanographie)) “Représentation de la réponse fonctionnelle dans un modèle prédateur-proie : du chemostat à l'écosystème ” ; the thesis of Gustavo Olivera-Botello (Université Claude Bernard Lyon 1, Modélisation), “Modélisation numérique des aspects immunologiques de la réaction à l'infection à HPV et de la vaccination anti-HPV par Gardasil” ; the thesis of Roukaya Keinj (Université Nancy I, Mathématiques Appliquées) “Modélisation de la croissance d'une tumeur après traitement par radiothérapie”.

M. Chaves attended the meeting for the 3rd year of the thesis of F. Fourré (University of Luxembourg).